Straighten it as normal, and check what the differences in spoke tension are like when you've got it true.
Provided there are no really major differences in left/right tension the wheel will be safe enough to ride.
Major differences means a group on one side are nearly at the rounding off the nipple stage, whilst the matching spokes to the other flange are still fairly slack.
If the differences are smaller, you will find that the wheel won't stay true very well and that you have to fiddle with it fairly frequently to keep it from rubbing on the brakes. The same is the case with tight/slack spokes that are correcting an egg-shaped rim.