If you use large-sized tubes (eg 27.5x1.75 to 2.5 MTB tubes), slow punctures will be a relatively common occurrence, be that thorns plugging the holes they've just made, or tiny fragments of glass only getting 90% of the way through the tube.
If you use lighter/narrower tubes, slow punctures will be pretty rare.
When you get the tubes out, pump them up to jumbo size so that you can find the holes, and by lining the mostly deflated tube up against the tyre, where the offending object is if it turns out not to be the valve. Don't lose track of how the tube lines up against the tyre, by turning it over or moving the tyre round the rim.
Blowing up to jumbo size stretches the hole along with the tube, so it's bigger and easier to find. Jumbo size might be 15 cm thick and 3 m in diameter. It's surprising how big you can get them before they go bang (unless there's a thin spot that develops into a local bul;ge).