Pilots have control over all aircraft systems, to a greater or lesser degree. It is the pilots who are responsible for all communications with ATC and others, and there are several equipment failure situations (as intimated in the conversation about Swissair 111 above) where control over electrical loads is crucial. Many areas of the world are incompatible with some more modern datalink communication systems, and require it to be switched off to eliminate frequencies being saturated with automated aircraft systems trying to find a compatible receiver. These systems do fail, also, and in order to use the alternate system, the first must be able to be switched off. All that said, the next generation of transponders are likely to be automated, and will carry a totally unique identifier for the aircraft (like an IPv4 or 6 address) that will, if all the supporting systems work, identify the aeroplane and the flight it's operating at all times, including in areas where VHF communications and radars are not available. But there will still be times when it fails!